BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB026B02SP1|AL428489
(543 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1309 1063 0.0
>3x_Contig1309
Length = 8998
Score = 1063 bits (533), Expect = 0.0
Identities = 538/543 (99%)
Strand = Plus / Minus
Query: 1 aaaactgagtttaagtctttcaagaagcgatattgaggtgttttcactaaagtatacttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6262 aaaactgagtttaagtctttcaagaagcgatattgaggtgttttcactaaagtatacttc 6203
Query: 61 aagaaatcatgcaccagaggttcgatattatctatttggcttgaatcgaacactccggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6202 aagaaatcatgcaccagaggttcgatattatctatttggcttgaatcgaacactccggaa 6143
Query: 121 atgactattgcattagggccctcgtatggggccggtaaaggtgtctcggatgcggggata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6142 atgactattgcattagggccctcgtatggggccggtaaaggtgtctcggatgcggggata 6083
Query: 181 ttaattaaggttttcgtgacttttgttgagtaatgttcttgcattctttccttttctaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6082 ttaattaaggttttcgtgacttttgttgagtaatgttcttgcattctttccttttctaat 6023
Query: 241 gttttaaatagttgatagagttctgatgcgtccttgagtgttaactccggcttcttagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6022 gttttaaatagttgatagagttctgatgcgtccttgagtgttaactccggcttcttagat 5963
Query: 301 tgtgattggmtctttttyaggtaaactgatctatttggttctcgatcttgactttcggag 360
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5962 tgtgattggatcttttttaggtaaactgatctatttggttctcgatcttgactttcggag 5903
Query: 361 tagagagcgtatgcagatgccaactctttgataaattgacgctgtggtactctcattggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5902 tagagagcgtatgcagatgccaactctttgataaattgacgctgtggtactctcattggt 5843
Query: 421 ttcamatgaagacttaatttttgagtgtcctctatgaattthtcaaaaacagcacaaatt 480
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5842 ttcaaatgaagacttaatttttgagtgtcctctatgaatttatcaaaaacagcacaaatt 5783
Query: 481 tgatcacaccagttcacttgttttttgthaacgttcaagaccaattcagagtaaggcata 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5782 tgatcacaccagttcacttgttttttgtaaacgttcaagaccaattcagagtaaggcata 5723
Query: 541 ttt 543
|||
Sbjct: 5722 ttt 5720
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3574
Number of Sequences: 1807
Number of extensions: 3574
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 543
length of database: 10,358,551
effective HSP length: 16
effective length of query: 527
effective length of database: 10,329,639
effective search space: 5443719753
effective search space used: 5443719753
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.2 bits)